Intron exon finder software

Gene Prediction in Viruses, Phages and Plasmids. Sequences of viruses, phages or plasmids can be analyzed either by the GeneMark. All the software programs mentioned here are available for download and local installation.

Contact Us Home. Conserved amino acids. Merlin viewer. Peak heights. PLINK viewer. Resize images. Seq to Fasta. TODO list. Virtual stickIt notes. Web programs. Chromosome lengths. Consensus site finder. Degenerate motif finder. Exon finder. Fusion protein RE. Fusion protein PCR. Genetic distance. Heterozygous InDels. Invert sequence. List comparison. Microsatellite peaks.

Mismatch Tm. Mutagenesis silent. Mutation severity. ORF annotation. Phred score calculation. Protein cleavage fragments. Random sequence. Residue codes etc. Restriction sites. RFLP enzyme picker. Stats decision tree.

Lab calculations. Grams to add. Final volume. Maximum concentrations. Find information about the roles that alternative splicing variants play in protein structure and function. Search for alternative splice events and the resultant isoform splice patterns of genes from human, and other model species. Search for annotated information about gene structure, function and expression, and alternative splicing events. An algorithm designed to retrieve, compare and search for the exon-intron structure of existing gene annotations.

Identify exonic splicing silencers and predict if a coding SNP abolishes exonic splicing silencer motifs. Asoftware tool for identifying and removing the vector from raw DNA sequence data without prior knowledge of the vector sequence. A unified resource for analyzing effects of alternative splicing events in the context of protein structures. Predict splicing phenotypes by identifying sequence changes that disrupt or alter predicted ESEs. Explore the molecular biology and genomics of C.

Search for information on experimentally validated human noncoding fragments with gene enhancer activity as assessed in transgenic mice. Search for information about all introns encoded in the nuclear and mitochondrial genomes of the yeast Saccharomyces cerevisiae.